BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB032F06SP1|AL429602
(80 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 140 4e-34
3x_Contig1622 120 4e-28
3x_Contig1486 118 2e-27
3x_Contig1722 116 6e-27
3x_Contig1636 116 6e-27
>3x_Contig1727
Length = 17872
Score = 140 bits (70), Expect = 4e-34
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 2 tcaagttatctaggcaacatggccgagcggttaaggcgaaagawtagaaatcttttgggc 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13271 tcaagttatctaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggc 13330
Query: 62 tctg-ccgcgcaggttcgag 80
|||| |||||||||||||||
Sbjct: 13331 tctgcccgcgcaggttcgag 13350
>3x_Contig1622
Length = 13445
Score = 120 bits (60), Expect = 4e-28
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 12 taggcaacatggccgagcggttaaggcgaaagawtagaaatcttttgggctctg-ccgcg 70
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 4245 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 4304
Query: 71 caggttcgag 80
||||||||||
Sbjct: 4305 caggttcgag 4314
Score = 116 bits (58), Expect = 6e-27
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 14 ggcaacatggccgagcggttaaggcgaaagawtagaaatcttttgggctctg-ccgcgca 72
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 4752 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 4811
Query: 73 ggttcgag 80
||||||||
Sbjct: 4812 ggttcgag 4819
>3x_Contig1486
Length = 12131
Score = 118 bits (59), Expect = 2e-27
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 13 aggcaacatggccgagcggttaaggcgaaagawtagaaatcttttgggctctg-ccgcgc 71
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 11494 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 11435
Query: 72 aggttcgag 80
|||||||||
Sbjct: 11434 aggttcgag 11426
>3x_Contig1722
Length = 17718
Score = 116 bits (58), Expect = 6e-27
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 14 ggcaacatggccgagcggttaaggcgaaagawtagaaatcttttgggctctg-ccgcgca 72
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1721 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 1662
Query: 73 ggttcgag 80
||||||||
Sbjct: 1661 ggttcgag 1654
>3x_Contig1636
Length = 15667
Score = 116 bits (58), Expect = 6e-27
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 14 ggcaacatggccgagcggttaaggcgaaagawtagaaatcttttgggctctg-ccgcgca 72
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 6398 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 6339
Query: 73 ggttcgag 80
||||||||
Sbjct: 6338 ggttcgag 6331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 216
Number of Sequences: 1807
Number of extensions: 216
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 5
length of query: 80
length of database: 10,358,551
effective HSP length: 14
effective length of query: 66
effective length of database: 10,333,253
effective search space: 681994698
effective search space used: 681994698
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 48 (96.4 bits)